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  "Description": "A general framework supporting the implementation of\ntargeted maximum likelihood estimators (TMLEs) of a diverse\nrange of statistical target parameters through a unified\ninterface. The goal is that the exposed framework be as general\nas the mathematical framework upon which it draws.",
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  "Repository": "https://tlverse.r-universe.dev",
  "Date/Publication": "2024-11-14 19:12:21 UTC",
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    "delta_param_OR",
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    "delta_param_PAR",
    "delta_param_RR",
    "density_formula",
    "discretize_variable",
    "fit_tmle3",
    "get_propensity_scores",
    "LF_base",
    "LF_derived",
    "LF_emp",
    "LF_fit",
    "LF_known",
    "LF_static",
    "LF_targeted",
    "Likelihood",
    "Likelihood_cache",
    "make_CF_Likelihood",
    "make_Likelihood",
    "make_tmle3_Task",
    "Param_ATC",
    "Param_ATE",
    "Param_ATT",
    "Param_base",
    "Param_delta",
    "Param_mean",
    "Param_MSM",
    "Param_stratified",
    "Param_survival",
    "Param_TSM",
    "plot_vim",
    "point_tx_likelihood",
    "point_tx_npsem",
    "point_tx_task",
    "process_missing",
    "propensity_score_plot",
    "propensity_score_table",
    "submodel_logit",
    "summary_from_estimates",
    "survival_tx_likelihood",
    "survival_tx_npsem",
    "survival_tx_task",
    "Targeted_Likelihood",
    "time_ordering",
    "tmle_ATC",
    "tmle_ATE",
    "tmle_ATT",
    "tmle_MSM",
    "tmle_OR",
    "tmle_PAR",
    "tmle_RR",
    "tmle_stratified",
    "tmle_survival",
    "tmle_TSM_all",
    "tmle3",
    "tmle3_Fit",
    "tmle3_Node",
    "tmle3_Spec",
    "tmle3_Spec_ATC",
    "tmle3_Spec_ATE",
    "tmle3_Spec_ATT",
    "tmle3_Spec_MSM",
    "tmle3_Spec_OR",
    "tmle3_Spec_PAR",
    "tmle3_Spec_RR",
    "tmle3_Spec_stratified",
    "tmle3_Spec_survival",
    "tmle3_Spec_TSM_all",
    "tmle3_Task",
    "tmle3_Update",
    "tmle3_Update_survival",
    "tmle3_vim",
    "train_lf"
  ],
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    {
      "page": "npsem_helpers",
      "title": "Helper functions for the NPSEM",
      "topics": [
        "all_ancestors",
        "time_ordering"
      ]
    },
    {
      "page": "bound",
      "title": "Bound (Truncate) Likelihoods",
      "topics": [
        "bound"
      ]
    },
    {
      "page": "CF_Likelihood",
      "title": "Counterfactual Likelihood",
      "concept": [
        "Likelihood objects"
      ],
      "topics": [
        "CF_Likelihood",
        "make_CF_Likelihood"
      ]
    },
    {
      "page": "define_lf",
      "title": "Define a Likelihood Factor",
      "concept": [
        "Likelihood objects"
      ],
      "topics": [
        "define_lf"
      ]
    },
    {
      "page": "define_param",
      "title": "Define a Parameter",
      "concept": [
        "Parameters"
      ],
      "topics": [
        "define_param"
      ]
    },
    {
      "page": "delta_param_ATE",
      "title": "PAR = Linear Contrast EY1-EY0",
      "topics": [
        "delta_param_ATE"
      ]
    },
    {
      "page": "delta_param_OR",
      "title": "Odds Ratio odds(Y1)/odds(Y0)",
      "topics": [
        "delta_param_OR"
      ]
    },
    {
      "page": "delta_param_PAF",
      "title": "PAF = 1 - (1/RR(EY/E0))",
      "topics": [
        "delta_param_PAF"
      ]
    },
    {
      "page": "delta_param_PAR",
      "title": "PAR = Linear Contrast EY-EY0",
      "topics": [
        "delta_param_PAR"
      ]
    },
    {
      "page": "delta_param_RR",
      "title": "Risk Ratio EY1/EY0",
      "topics": [
        "delta_param_RR"
      ]
    },
    {
      "page": "propensity_scores",
      "title": "Get and Plot Propensity Scores",
      "topics": [
        "density_formula",
        "get_propensity_scores",
        "propensity_score_plot",
        "propensity_score_table"
      ]
    },
    {
      "page": "discretize_variable",
      "title": "Discretize Continuous Variable",
      "topics": [
        "discretize_variable"
      ]
    },
    {
      "page": "ED_from_estimates",
      "title": "Get Empirical Mean of EIFs from Estimates",
      "topics": [
        "ED_from_estimates"
      ]
    },
    {
      "page": "LF_base",
      "title": "Base Class for Defining Likelihood Factors",
      "concept": [
        "Likelihood objects"
      ],
      "topics": [
        "LF_base"
      ]
    },
    {
      "page": "LF_derived",
      "title": "Derived Likelihood Factor Estimated from Data + Other Likelihood values, using sl3.",
      "concept": [
        "Likelihood objects"
      ],
      "topics": [
        "LF_derived"
      ]
    },
    {
      "page": "LF_emp",
      "title": "Likelihood Factor Estimated using Empirical Distribution",
      "concept": [
        "Likelihood objects"
      ],
      "topics": [
        "LF_emp"
      ]
    },
    {
      "page": "LF_fit",
      "title": "Likelihood Factor Estimated from Data using sl3.",
      "concept": [
        "Likelihood objects"
      ],
      "topics": [
        "LF_fit"
      ]
    },
    {
      "page": "LF_known",
      "title": "Known True Likelihood Factor",
      "concept": [
        "Likelihood objects"
      ],
      "topics": [
        "LF_known"
      ]
    },
    {
      "page": "LF_static",
      "title": "Static Likelihood Factor",
      "concept": [
        "Likelihood objects"
      ],
      "topics": [
        "LF_static"
      ]
    },
    {
      "page": "LF_targeted",
      "title": "Use a likelihood factor from an existing targeted likelihood",
      "concept": [
        "Likelihood objects"
      ],
      "topics": [
        "LF_targeted"
      ]
    },
    {
      "page": "Likelihood",
      "title": "Class for Likelihood",
      "concept": [
        "Likelihood objects"
      ],
      "topics": [
        "Likelihood",
        "make_Likelihood"
      ]
    },
    {
      "page": "Likelihood_cache",
      "title": "Cache Likelihood values, update those values",
      "topics": [
        "Likelihood_cache"
      ]
    },
    {
      "page": "Param_ATC",
      "title": "Additive Effect of Treatment Among the Treated",
      "concept": [
        "Parameters"
      ],
      "topics": [
        "Param_ATC"
      ]
    },
    {
      "page": "Param_ATE",
      "title": "Average Treatment Effect",
      "concept": [
        "Parameters"
      ],
      "topics": [
        "Param_ATE"
      ]
    },
    {
      "page": "Param_ATT",
      "title": "Additive Effect of Treatment Among the Treated",
      "concept": [
        "Parameters"
      ],
      "topics": [
        "Param_ATT"
      ]
    },
    {
      "page": "Param_base",
      "title": "Base Class for Defining Parameters",
      "concept": [
        "Parameters"
      ],
      "topics": [
        "Param_base"
      ]
    },
    {
      "page": "Param_delta",
      "title": "Delta Method Parameters",
      "concept": [
        "Parameters"
      ],
      "topics": [
        "Param_delta"
      ]
    },
    {
      "page": "Param_mean",
      "title": "Mean of Outcome Node",
      "concept": [
        "Parameters"
      ],
      "topics": [
        "Param_mean"
      ]
    },
    {
      "page": "Param_MSM",
      "title": "Stratified Parameter Estimates via MSM",
      "concept": [
        "Parameters"
      ],
      "topics": [
        "Param_MSM"
      ]
    },
    {
      "page": "Param_stratified",
      "title": "Stratified Parameter Estimates",
      "concept": [
        "Parameters"
      ],
      "topics": [
        "Param_stratified"
      ]
    },
    {
      "page": "Param_survival",
      "title": "Survival Curve",
      "concept": [
        "Parameters"
      ],
      "topics": [
        "Param_survival"
      ]
    },
    {
      "page": "Param_TSM",
      "title": "Treatment Specific Mean",
      "concept": [
        "Parameters"
      ],
      "topics": [
        "Param_TSM"
      ]
    },
    {
      "page": "plot_vim",
      "title": "Plot results of variable importance analysis",
      "topics": [
        "plot_vim"
      ]
    },
    {
      "page": "point_tx",
      "title": "Helper Functions for Point Treatment",
      "topics": [
        "point_tx_likelihood",
        "point_tx_npsem",
        "point_tx_task"
      ]
    },
    {
      "page": "process_missing",
      "title": "Preprocess Data to Handle Missing Variables",
      "topics": [
        "process_missing"
      ]
    },
    {
      "page": "submodel_logit",
      "title": "Logistic Submodel Fluctuation",
      "topics": [
        "submodel_logit"
      ]
    },
    {
      "page": "summary_from_estimates",
      "title": "Summarize Estimates",
      "topics": [
        "summary_from_estimates"
      ]
    },
    {
      "page": "survival_tx",
      "title": "Helper Functions for Survival Analysis",
      "topics": [
        "survival_tx_likelihood",
        "survival_tx_npsem",
        "survival_tx_task"
      ]
    },
    {
      "page": "Targeted_Likelihood",
      "title": "Targeted Likelihood",
      "concept": [
        "Likelihood objects"
      ],
      "topics": [
        "Targeted_Likelihood"
      ]
    },
    {
      "page": "tmle_ATC",
      "title": "All Treatment Specific Means",
      "topics": [
        "tmle_ATC"
      ]
    },
    {
      "page": "tmle_ATE",
      "title": "All Treatment Specific Means",
      "topics": [
        "tmle_ATE"
      ]
    },
    {
      "page": "tmle_ATT",
      "title": "All Treatment Specific Means",
      "topics": [
        "tmle_ATT"
      ]
    },
    {
      "page": "tmle_MSM",
      "title": "Make MSM version of Stratified TML estimator class",
      "topics": [
        "tmle_MSM"
      ]
    },
    {
      "page": "tmle_OR",
      "title": "Odds Ratio",
      "topics": [
        "tmle_OR"
      ]
    },
    {
      "page": "tmle_PAR",
      "title": "PAR and PAF",
      "topics": [
        "tmle_PAR"
      ]
    },
    {
      "page": "tmle_RR",
      "title": "Risk Ratio",
      "topics": [
        "tmle_RR"
      ]
    },
    {
      "page": "tmle_stratified",
      "title": "Stratified version of TML estimator from other Spec classes",
      "topics": [
        "tmle_stratified"
      ]
    },
    {
      "page": "tmle_survival",
      "title": "Treatment Specific Survival",
      "topics": [
        "tmle_survival"
      ]
    },
    {
      "page": "tmle_TSM_all",
      "title": "All Treatment Specific Means",
      "topics": [
        "tmle_TSM_all"
      ]
    },
    {
      "page": "tmle3",
      "title": "TMLE from a tmle3_Spec object",
      "topics": [
        "tmle3"
      ]
    },
    {
      "page": "tmle3_Fit",
      "title": "TMLE fit object",
      "concept": [
        "Parameters"
      ],
      "topics": [
        "fit_tmle3",
        "tmle3_Fit"
      ]
    },
    {
      "page": "tmle3_Node",
      "title": "A Node (set of variables) in an NPSEM",
      "topics": [
        "define_node",
        "tmle3_Node"
      ]
    },
    {
      "page": "tmle3_Spec",
      "title": "Defines a TML Estimator (except for the data)",
      "topics": [
        "tmle3_Spec"
      ]
    },
    {
      "page": "tmle3_Spec_ATC",
      "title": "Defines a TML Estimator (except for the data)",
      "topics": [
        "tmle3_Spec_ATC"
      ]
    },
    {
      "page": "tmle3_Spec_ATE",
      "title": "Defines a TML Estimator (except for the data)",
      "topics": [
        "tmle3_Spec_ATE"
      ]
    },
    {
      "page": "tmle3_Spec_ATT",
      "title": "Defines a TML Estimator (except for the data)",
      "topics": [
        "tmle3_Spec_ATT"
      ]
    },
    {
      "page": "tmle3_Spec_MSM",
      "title": "Defines a Stratified TML Estimator with MSM (except for the data)",
      "topics": [
        "tmle3_Spec_MSM"
      ]
    },
    {
      "page": "tmle3_Spec_OR",
      "title": "Defines a TML Estimator for the Odds Ratio",
      "topics": [
        "tmle3_Spec_OR"
      ]
    },
    {
      "page": "tmle3_Spec_PAR",
      "title": "Defines a tmle (minus the data)",
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      "source": "framework.Rmd",
      "filename": "framework.html",
      "title": "tmle3 Framework Overview",
      "author": "Jeremy Coyle",
      "engine": "knitr::rmarkdown",
      "headings": [
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        "Motivating Example",
        "NPSEM",
        "Causal Considerations",
        "Example",
        "tmle3_Task",
        "Likelihood",
        "Likelihood Factor Objects",
        "LF_emp",
        "LF_fit",
        "Specifying a priori knowledge.",
        "Counterfactual Likelihoods",
        "LF_static",
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        "Counterfactual Tasks",
        "Update Procedure",
        "Target Parameter",
        "tmle3_Fit - Putting it all together",
        "TMLE Specification",
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      "created": "2018-03-06 01:43:05",
      "modified": "2021-03-12 23:14:53",
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