{ "_id": "6a485bf8e06c18f0a6536c15", "Package": "tmle3mediate", "Title": "Targeted Learning for Causal Mediation Analysis", "Version": "0.0.3", "Authors@R": "c(\nperson(\"Nima\", \"Hejazi\", email = \"nh@nimahejazi.org\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-7127-2789\")),\nperson(\"James\", \"Duncan\", email = \"jpduncan@berkeley.edu\",\nrole = \"aut\"),\nperson(\"David\", \"McCoy\", email = \"david_mccoy@berkeley.edu\",\nrole = \"aut\"),\nperson(\"Mark\", \"van der Laan\", email = \"laan@berkeley.edu\",\nrole = c(\"ctb\", \"ths\"),\ncomment = c(ORCID = \"0000-0003-1432-5511\"))\n)", "Maintainer": "Nima Hejazi ", "Description": "Targeted maximum likelihood (TML) estimation of\npopulation-level causal effects in mediation analysis. The\ncausal effects are defined by joint static or stochastic\ninterventions applied to the exposure and the mediator.\nTargeted doubly robust estimators are provided for the\nclassical natural direct and indirect effects, as well as the\nmore recently developed population intervention direct and\nindirect effects.", "Remotes": [ "github::tlverse/sl3", "github::tlverse/tmle3", "github::nhejazi/medshift" ], "License": "GPL-3", "URL": "https://tlverse.org/tmle3mediate", "BugReports": "https://github.com/tlverse/tmle3mediate/issues", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "RoxygenNote": "7.1.1.9001", "Roxygen": "list(markdown = TRUE, r6 = FALSE)", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev", "Repository": "https://tlverse.r-universe.dev", "Date/Publication": "2021-08-29 18:07:20 UTC", "RemoteUrl": "https://github.com/tlverse/tmle3mediate", "RemoteRef": "HEAD", "RemoteSha": "70d1151c4adb54d044f355d06d07bcaeb7f8ae07", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-04 00:58:27 UTC", "User": "root" }, "Author": "Nima Hejazi [aut, cre, cph] (ORCID:\n),\nJames Duncan [aut],\nDavid McCoy [aut],\nMark van der Laan [ctb, ths] (ORCID:\n)", "_user": "tlverse", "_type": "src", "_file": "tmle3mediate_0.0.3.tar.gz", "_fileid": "https://r2.ropensci.org/4516bfcdd4a99082bb9127e74c0c89a5138e967197da161f27b9dbc4a183bf6d", "_filesize": 176725, "_sha256": "4516bfcdd4a99082bb9127e74c0c89a5138e967197da161f27b9dbc4a183bf6d", "_expires": "2026-10-12T01:03:51.000Z", "_created": "2026-07-04T00:58:27.000Z", "_published": "2026-07-04T01:03:52.798Z", "_jobs": [ { "job": 85089565872, "time": 280, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "8076856005" }, { "job": 85089565885, "time": 281, "config": "linux-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "8076856154" }, { "job": 85089565886, "time": 156, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "8076838637" }, { "job": 85089565868, "time": 206, "config": "macos-release-arm64", "r": "4.6.1", "check": "ERROR", "artifact": "8076845352" }, { "job": 85089270889, "time": 257, "config": "source", "r": "4.6.1", "check": "ERROR", "artifact": "8076816414" }, { "job": 85089565873, "time": 267, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8076854315" }, { "job": 85089565899, "time": 239, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "8076850511" }, { "job": 85089565903, "time": 246, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "8076851399" }, { "job": 85089565908, "time": 198, "config": "windows-release", "r": "4.6.1", "check": "ERROR", "artifact": "8076844510" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/tlverse/actions/runs/28689909309", "_status": "failure", "_upstream": "https://github.com/tlverse/tmle3mediate", "_commit": { "id": "70d1151c4adb54d044f355d06d07bcaeb7f8ae07", "author": "nima hejazi ", "committer": "GitHub ", "message": "Merge pull request #4 from tlverse/gh-actions\n\n", "time": 1630260440 }, "_maintainer": { "name": "Nima Hejazi", "email": "nh@nimahejazi.org", "login": "nhejazi", "bluesky": "@nimahejazi.org", "linkedin": "in/nshejazi", "orcid": "0000-0002-7127-2789", "description": "assistant professor of biostatistics at the harvard school of public health working on causal {inference, machine learning}", "uuid": 8527276 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4.0", "role": "Depends" }, { "package": "R6", "role": "Imports" }, { "package": "uuid", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "assertthat", "role": "Imports" }, { "package": "sl3", "version": ">= 1.4.2", "role": "Imports" }, { "package": "tmle3", "version": ">= 0.2.0", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "covr", "role": "Suggests" }, { "package": "here", "role": "Suggests" }, { "package": "stats", "role": "Suggests" }, { "package": "stringr", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "dplyr", "role": "Suggests" }, { "package": "Rsolnp", "role": "Suggests" }, { "package": "nnls", "role": "Suggests" }, { "package": "speedglm", "role": "Suggests" }, { "package": "hal9001", "role": "Suggests" }, { "package": "medshift", "role": "Suggests" }, { "package": "mma", "role": "Suggests" } ], "_owner": "tlverse", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "causal-inference", "causal-mediation-analysis", "machine-learning", "mediation-analysis", "stochastic-interventions", "targeted-learning", "treatment-effects" ], "_stars": 5, "_contributors": [ { "user": "jpdunc23", "count": 33, "uuid": 4753329 }, { "user": "nhejazi", "count": 31, "uuid": 8527276 }, { "user": "blind-contours", "count": 16, "uuid": 54640903 } ], "_userbio": { "uuid": 36939258, "type": "organization", "name": "tlverse", "followers": 75, "description": "Ecosystem of R packages for targeted (causal) machine learning" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/tmle3mediate" }, "_devurl": "https://github.com/tlverse/tmle3mediate", "_pkgdown": "https://tlverse.org/tmle3mediate", "_searchresults": 20, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/tmle3mediate.html", "manual.pdf" ], "_cranurl": false, "_exports": [ "LF_ipsi", "Param_medshift", "Param_NDE", "Param_NIE", "tmle_medshift", "tmle_NDE", "tmle_NIE", "tmle3_Spec_medshift", "tmle3_Spec_NDE", "tmle3_Spec_NIE" ], "_help": [ { "page": "LF_ipsi", "title": "Likelihood Factor for Incremental Propensity Score Interventions", "concept": [ "Likelihood objects" ], "topics": [ "LF_ipsi" ] }, { "page": "Param_medshift", "title": "Parameter for the Population Intervention (In)direct Effects", "concept": [ "Parameters" ], "topics": [ "Param_medshift" ] }, { "page": "Param_NDE", "title": "Parameter for the natural direct effect", "concept": [ "Parameters" ], "topics": [ "Param_NDE" ] }, { "page": "Param_NIE", "title": "Parameter for the natural indirect effect", "concept": [ "Parameters" ], "topics": [ "Param_NIE" ] }, { "page": "tmle_medshift", "title": "TML Estimator for the Population Intervention (In)direct Effects", "topics": [ "tmle_medshift" ] }, { "page": "tmle_NDE", "title": "TML Estimator for the Natural Direct Effect", "topics": [ "tmle_NDE" ] }, { "page": "tmle_NIE", "title": "TML Estimator for the Natural Indirect Effect", "topics": [ "tmle_NIE" ] }, { "page": "tmle3_Spec_medshift", "title": "TML Estimator for the Population Intervention (In)direct Effects", "topics": [ "tmle3_Spec_medshift" ] }, { "page": "tmle3_Spec_NDE", "title": "TML Estimator for the Natural Direct Effect", "topics": [ "tmle3_Spec_NDE" ] }, { "page": "tmle3_Spec_NIE", "title": "TML Estimator for the Natural Indirect Effect", "topics": [ "tmle3_Spec_NIE" ] } ], "_readme": "https://github.com/tlverse/tmle3mediate/raw/HEAD/README.md", "_rundeps": [ "abind", "assertthat", "backports", "base64enc", "BBmisc", "bitops", "bslib", "cachem", "caret", "caTools", "checkmate", "class", "cli", "clock", "codetools", "cpp11", "crayon", "data.table", "delayed", "diagram", "digest", "dplyr", "e1071", "evaluate", "farver", "fastmap", "fontawesome", "foreach", "fs", "future", "future.apply", "generics", "ggplot2", "globals", "glue", "gower", "gplots", "gtable", "gtools", "hardhat", "highr", "hms", "htmltools", "htmlwidgets", "igraph", "ipred", "isoband", "iterators", "jquerylib", "jsonlite", "KernSmooth", "knitr", "labeling", "lattice", "lava", "lifecycle", "listenv", "lubridate", "magrittr", "MASS", "Matrix", "memoise", "mime", "ModelMetrics", "mvtnorm", "nlme", "nnet", "numDeriv", "origami", "parallelly", "pillar", "pkgconfig", "plyr", "prettyunits", "pROC", "prodlim", "progress", "progressr", "proxy", "purrr", "R.methodsS3", "R.oo", "R.utils", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "Rdpack", "recipes", "reshape2", "rlang", "rmarkdown", "ROCR", "rpart", "rstackdeque", "S7", "sass", "scales", "shape", "sl3", "sparsevctrs", "SQUAREM", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "timechange", "timeDate", "tinytex", "tmle3", "tzdb", "utf8", "uuid", "vctrs", "viridisLite", "visNetwork", "withr", "xfun", "yaml" ], "_score": 3, "_indexed": true, "_nocasepkg": "tmle3mediate", "_universes": [ "tlverse", "nhejazi" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.3", "date": "2026-07-04T01:01:36.000Z", "distro": "resolute", "commit": "70d1151c4adb54d044f355d06d07bcaeb7f8ae07", "fileid": "https://r2.ropensci.org/96a88debc3062523ee2b2a5e555147faab9fad18c9b92171ec9b51558b22738c", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/tlverse/actions/runs/28689909309" }, { "r": "4.6.1", "os": "linux", "version": "0.0.3", "date": "2026-07-04T01:01:34.000Z", "distro": "resolute", "commit": "70d1151c4adb54d044f355d06d07bcaeb7f8ae07", "fileid": "https://r2.ropensci.org/c5de3149f9a5ad87d14915eabe663ffe8aee8442a7a48ea5ada0e1e309e65a75", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/tlverse/actions/runs/28689909309" }, { "r": "4.5.3", "os": "mac", "version": "0.0.3", "date": "2026-07-04T01:00:10.000Z", "commit": "70d1151c4adb54d044f355d06d07bcaeb7f8ae07", "fileid": "https://r2.ropensci.org/1e2969a1a38ffc4d4fcfcaa358e0d3043767c3687d2a23154016e03a72938824", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/tlverse/actions/runs/28689909309" }, { "r": "4.6.1", "os": "mac", "version": "0.0.3", "date": "2026-07-04T01:00:46.000Z", "commit": "70d1151c4adb54d044f355d06d07bcaeb7f8ae07", "fileid": "https://r2.ropensci.org/dc331ca4e2f706ee26b8ffcf4c73bff09b9b4c416f845149482606ee783b11c2", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/tlverse/actions/runs/28689909309" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.3", "date": "2026-07-04T01:03:17.000Z", "commit": "70d1151c4adb54d044f355d06d07bcaeb7f8ae07", "fileid": "https://r2.ropensci.org/b650fc2e0cf77d16ac4a9e1a767e12f61ee4bea08508cbf0a57724e1bf4179e2", "status": "success", "buildurl": "https://github.com/r-universe/tlverse/actions/runs/28689909309" }, { "r": "4.7.0", "os": "win", "version": "0.0.3", "date": "2026-07-04T01:00:19.000Z", "commit": "70d1151c4adb54d044f355d06d07bcaeb7f8ae07", "fileid": "https://r2.ropensci.org/a851c02d822bcd1e2a95b37df0baa33e17ce04b49132810baac78d93f667f771", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/tlverse/actions/runs/28689909309" }, { "r": "4.5.3", "os": "win", "version": "0.0.3", "date": "2026-07-04T01:00:25.000Z", "commit": "70d1151c4adb54d044f355d06d07bcaeb7f8ae07", "fileid": "https://r2.ropensci.org/f335b4d969e17fb0d18528c1c389834cabe83835d1a6ff975ac1e5b5f07fce0f", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/tlverse/actions/runs/28689909309" }, { "r": "4.6.1", "os": "win", "version": "0.0.3", "date": "2026-07-04T01:00:34.000Z", "commit": "70d1151c4adb54d044f355d06d07bcaeb7f8ae07", "fileid": "https://r2.ropensci.org/ff56ba70d5018dfa7f3599dce2111573bfdb6b6adb344756a4b044a322615f25", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/tlverse/actions/runs/28689909309" } ] }